C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: matrin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394805 MATR3-002 ENSG00000015479 9606 + 5:139293648-139331359 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000394805
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000394805 24.207±0.00 11.178±0.00 8.705±0.00 2.934±0.00 8.413±0.00 11.389±0.00 11.850±0.00 1.860±0.00 12.372±2.41 5.273±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D1 CIL_0005D1_0001 CGP 5:138868923-139293557
CIL_0005D0 CIL_0005D0_0001 CGP 5:139273752-139369720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005198 TAS structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005637 TAS nuclear inner membrane
GO:0008219 IEA cell death
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166793 Matr3-001 protein_coding Mus_musculus 0 5618
ENSMUST00000187389 Matr3-008 protein_coding Mus_musculus 0 4529
ENSMUST00000190029 Matr3-007 protein_coding Mus_musculus 0 4242
ENSMUST00000190121 Matr3-002 protein_coding Mus_musculus 0 3398
ENSMUST00000190653 Matr3-003 protein_coding Mus_musculus 0 2521
ENSMUST00000186796 Matr3-005 protein_coding Mus_musculus 0 2510
ENSMUST00000188767 Matr3-004 nonsense_mediated_decay Mus_musculus 0 2507
ENSMUST00000188275 Matr3-006 protein_coding Mus_musculus 0 2438
ENSMUST00000186614 Matr3-010 protein_coding Mus_musculus 0 2285
ENSMUST00000187980 Matr3-016 retained_intron Mus_musculus 0 1740
ENSMUST00000188359 Matr3-015 protein_coding Mus_musculus 0 1075
ENSMUST00000187513 RP23-461O23.5-001 protein_coding Mus_musculus 0 736
ENSMUST00000160839 Matr3-ps2-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000189039 Matr3-013 protein_coding Mus_musculus 0 651
ENSMUST00000187793 RP23-461O23.5-004 protein_coding Mus_musculus 0 649
ENSMUST00000190458 RP23-461O23.5-005 protein_coding Mus_musculus 0 590
ENSMUST00000186292 Matr3-011 protein_coding Mus_musculus 0 582
ENSMUST00000187543 Matr3-009 protein_coding Mus_musculus 0 435
ENSMUST00000186158 Matr3-012 retained_intron Mus_musculus 0 261
ENSMUST00000189163 RP23-461O23.5-003 protein_coding Mus_musculus 0 243
ENSMUST00000190570 RP23-461O23.5-002 processed_transcript Mus_musculus 0 224
ENSMUST00000186295 RP23-461O23.5-006 processed_transcript Mus_musculus 0 191

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