C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 4A (RBP1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395168 ARID4A-003 ENSG00000032219 9606 + 14:58298556-58372226 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000395168
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000395168 1.639±0.00 1.495±0.00 1.417±0.00 1.441±0.00 0.993±0.00 0.924±0.00 0.681±0.00 0.475±0.00 3.205±0.00 1.799±1.41 1.700±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LX CIL_0004LX_0001 CGP 14:58244831-58373887
CIL_0001K9 CIL_0001K9_0001 CGP 14:58298385-58408701

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0017053 IDA transcriptional repressor complex
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046305 Arid4a-001 protein_coding Mus_musculus 0 3469
ENSMUST00000135709 Arid4a-004 protein_coding Mus_musculus 0 1474
ENSMUST00000125125 Arid4a-003 protein_coding Mus_musculus 0 1146
ENSMUST00000134718 Arid4a-002 processed_transcript Mus_musculus 0 1118

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