C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fas (TNFRSF6) associated factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396153 FAF1-001 ENSG00000185104 9606 - 1:50439478-50960263 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396153
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396153 1.342±0.00 1.820±0.00 2.479±0.10 2.644±0.10 2.002±0.47 4.105±2.35 2.059±0.00 2.225±1.36 1.355±0.52 7.827±6.12 2.304±1.15 1.830±0.57 5.921±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K0 CIL_0008K0_0001 VISTA 1:50240418-50841642
CIL_0008UT CIL_0008UT_0001 VISTA 1:50268874-50870617
CIL_0008US CIL_0008US_0001 VISTA 1:50333169-50934241
CIL_0009AC CIL_0009AC_0001 VISTA 1:50399523-51001114
CIL_00063F CIL_00063F_0002 CGP 1:50417550-50960263
CIL_0006WA CIL_0006WA_0002 CGP 1:50439478-50974633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005635 IEA nuclear envelope
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006915 IEA apoptotic process
GO:0007253 IMP cytoplasmic sequestering of NF-kappaB
GO:0008219 IMP cell death
GO:0019887 NAS protein kinase regulator activity
GO:0019901 IDA protein kinase binding
GO:0019904 IEA protein domain specific binding
GO:0030155 IEA regulation of cell adhesion
GO:0031072 IDA heat shock protein binding
GO:0031265 NAS CD95 death-inducing signaling complex
GO:0031334 IMP positive regulation of protein complex assembly
GO:0031625 IDA ubiquitin protein ligase binding
GO:0034098 IDA Cdc48p-Npl4p-Ufd1p AAA ATPase complex
GO:0042176 IMP regulation of protein catabolic process
GO:0043065 NAS positive regulation of apoptotic process
GO:0043130 IDA ubiquitin binding
GO:0043161 NAS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045859 NAS regulation of protein kinase activity
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051059 IPI NF-kappaB binding
GO:1902043 IEA positive regulation of extrinsic apoptotic signaling pathway via death domain receptors

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102724 Faf1-001 protein_coding Mus_musculus 0 3441
ENSMUST00000155204 Faf1-003 processed_transcript Mus_musculus 0 941
ENSMUST00000143217 Faf1-002 processed_transcript Mus_musculus 5e-27 128

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