C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396432 ARHGAP21-001 ENSG00000107863 9606 - 10:24583609-24723668 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartMuscleOvaryPlacentaENST00000396432
Transcript ID Brain Breast Colon Heart Muscle Ovary Placenta
ENST00000396432 12.456±4.08 2.951±0.42 2.600±0.74 2.823±2.06 0.805±0.00 1.408±0.00 2.361±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D1 CIL_0002D1_0001 CGP 10:23694746-24723668
CIL_00077X CIL_00077X_0002 CGP 10:24583609-24952604

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005794 IDA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0007030 IMP Golgi organization
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0031410 IEA cytoplasmic vesicle
GO:0043547 IEA positive regulation of GTPase activity
GO:0051683 IDA establishment of Golgi localization
GO:0051684 IMP maintenance of Golgi location
GO:0072384 IMP organelle transport along microtubule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114594 Arhgap21-001 protein_coding Mus_musculus 0 6529
ENSMUST00000154230 Arhgap21-201 protein_coding Mus_musculus 0 6457
ENSMUST00000173194 Arhgap21-013 protein_coding Mus_musculus 0 5854
ENSMUST00000141298 Arhgap21-012 protein_coding Mus_musculus 0 5681
ENSMUST00000174584 Arhgap21-005 nonsense_mediated_decay Mus_musculus 0 3759
ENSMUST00000173784 Arhgap21-018 protein_coding Mus_musculus 0 1391
ENSMUST00000154657 Arhgap21-007 retained_intron Mus_musculus 0 654
ENSMUST00000174825 Arhgap21-014 processed_transcript Mus_musculus 0 649
ENSMUST00000127512 Arhgap21-008 retained_intron Mus_musculus 0 446
ENSMUST00000140230 Arhgap21-004 protein_coding Mus_musculus 0 422
ENSMUST00000131542 Arhgap21-011 retained_intron Mus_musculus 0 375
ENSMUST00000136241 Arhgap21-009 processed_transcript Mus_musculus 0 368
ENSMUST00000156142 Arhgap21-006 processed_transcript Mus_musculus 0 361
ENSMUST00000125783 Arhgap21-015 protein_coding Mus_musculus 5e-29 135

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