C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396526 SNX6-001 ENSG00000129515 9606 - 14:34561094-34630109 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyOvaryPlacentaTestisENST00000396526
Transcript ID Brain Kidney Ovary Placenta Testis
ENST00000396526 2.559±0.00 1.270±0.00 11.073±6.50 7.677±0.00 11.597±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RR CIL_0008RR_0001 VISTA 14:33972978-34576380
CIL_0005RF CIL_0005RF_0002 CGP 14:34515929-34630183
CIL_0005RE CIL_0005RE_0002 CGP 14:34561094-34714823

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005622 NAS intracellular
GO:0005634 IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0006886 NAS intracellular protein transport
GO:0007175 NAS negative regulation of epidermal growth factor-activated receptor activity
GO:0030512 IDA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031410 IEA cytoplasmic vesicle
GO:0031901 IDA early endosome membrane
GO:0035091 IBA:IEA phosphatidylinositol binding
GO:0042147 IMP retrograde transport, endosome to Golgi
GO:0042803 IPI protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005798 Snx6-201 protein_coding Mus_musculus 0 1648
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0.0000001 64

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