C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 9A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396761 ATG9A-001 ENSG00000198925 9606 - 2:219219380-219229717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396761
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396761 14.705±0.00 10.866±0.00 8.336±5.27 6.363±3.23 6.315±0.00 9.710±8.51 8.397±0.00 12.064±0.00 7.411±6.47 47.874±43.63 13.324±1.56 11.452±1.13 18.818±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006EB CIL_0006EB_0001 CGP 2:219195237-219218990
CIL_0006EA CIL_0006EA_0001 CGP 2:219209768-219229717
CIL_0006EI CIL_0006EI_0001 CGP 2:219209772-219236669

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IMP autophagic vacuole assembly
GO:0000407 IBA pre-autophagosomal structure
GO:0000422 IBA mitochondrion degradation
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0005770 IDA late endosome
GO:0005776 IBA autophagic vacuole
GO:0005783 IEA endoplasmic reticulum
GO:0005802 IDA trans-Golgi network
GO:0015002 IEA heme-copper terminal oxidase activity
GO:0015031 IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0016021 IBA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0034497 IBA protein localization to pre-autophagosomal structure
GO:0034727 IBA piecemeal microautophagy of nucleus
GO:0044805 IBA late nucleophagy
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040689 Atg9a-201 protein_coding Mus_musculus 0 3952
ENSMUST00000188347 Atg9a-001 protein_coding Mus_musculus 0 3952
ENSMUST00000189702 Atg9a-002 protein_coding Mus_musculus 0 3952
ENSMUST00000189820 Atg9a-005 protein_coding Mus_musculus 0 3415
ENSMUST00000189665 Atg9a-003 nonsense_mediated_decay Mus_musculus 0 3140
ENSMUST00000187785 Atg9a-008 protein_coding Mus_musculus 0 913
ENSMUST00000188430 Atg9a-004 retained_intron Mus_musculus 0 815
ENSMUST00000187601 Atg9a-007 retained_intron Mus_musculus 0 261
ENSMUST00000186744 Atg9a-006 protein_coding Mus_musculus 0 252

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