C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cation channel, sperm associated 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396879 CATSPER2-001 ENSG00000166762 9606 - 15:43628503-43648844 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLungOvaryPlacentaTestisENST00000396879
Transcript ID Brain Breast Colon Lung Ovary Placenta Testis
ENST00000396879 0.154±0.00 0.174±0.07 0.260±0.00 0.096±0.01 0.203±0.02 0.063±0.00 5.849±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693
CIL_000682 CIL_000682_0001 CGP 15:43599398-43668118

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005227 IEA calcium activated cation channel activity
GO:0005245 IBA voltage-gated calcium channel activity
GO:0005515 IPI protein binding
GO:0005886 IBA plasma membrane
GO:0006811 IEA ion transport
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007338 TAS single fertilization
GO:0016020 IEA membrane
GO:0030154 IEA cell differentiation
GO:0030317 IEA:IBA sperm motility
GO:0031514 IEA motile cilium
GO:0032504 TAS multicellular organism reproduction
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035036 TAS sperm-egg recognition
GO:0036128 IEA:ISS CatSper complex
GO:0055085 IEA transmembrane transport
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038073 Catsper2-001 protein_coding Mus_musculus 0 976
ENSMUST00000146521 Catsper2-004 retained_intron Mus_musculus 0 250
ENSMUST00000154604 Catsper2-002 nonsense_mediated_decay Mus_musculus 0 250

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