C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 98kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397007 NUP98-004 ENSG00000110713 9606 - 11:3711835-3797547 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397007
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397007 6.970±0.00 1.195±0.00 2.243±0.96 3.571±0.00 3.100±0.10 3.018±1.71 2.776±0.00 2.310±0.77 4.272±0.00 10.893±0.00 8.141±4.62 6.082±0.39 16.189±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005JH CIL_0005JH_0001 CGP 11:3645128-3671384
CIL_0005K0 CIL_0005K0_0001 CGP 11:3665587-3797792
CIL_0005K9 CIL_0005K9_0001 CGP 11:3671083-3826371

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000059 NAS protein import into nucleus, docking
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0005215 TAS transporter activity
GO:0005515 IPI protein binding
GO:0005635 IDA nuclear envelope
GO:0005643 NAS:IEA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0006260 IMP DNA replication
GO:0006810 IEA transport
GO:0006913 TAS nucleocytoplasmic transport
GO:0006999 NAS nuclear pore organization
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0017056 IMP structural constituent of nuclear pore
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031080 NAS nuclear pore outer ring
GO:0031965 IDA nuclear membrane
GO:0034399 IDA nuclear periphery
GO:0042405 IDA nuclear inclusion body
GO:0044281 TAS small molecule metabolic process
GO:0044615 IDA nuclear pore nuclear basket
GO:0051028 IEA mRNA transport
GO:0051292 IMP nuclear pore complex assembly
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070165 Nup98-201 protein_coding Mus_musculus 0 3880

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