C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal sequence receptor, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397511 SSR1-002 ENSG00000124783 9606 - 6:7287570-7313198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397511
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397511 17.566±0.00 12.415±0.00 4.928±0.00 7.608±0.00 12.673±7.49 10.106±1.72 6.338±3.75 16.776±3.79 12.891±4.04 12.897±3.91 3.129±2.09 15.142±3.69 17.244±1.65 17.859±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000817 CIL_000817_0001 VISTA 6:6863717-7465821
CIL_0003S7 CIL_0003S7_0001 CGP 6:7107597-7347446
CIL_0007T6 CIL_0007T6_0001 VISTA 6:7260927-7862502
CIL_00004W CIL_00004W_0001 CGP 6:7268306-7389743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021864 Ssr1-201 protein_coding Mus_musculus 0 1291
ENSMUST00000020411 Osbpl5-201 protein_coding Mus_musculus 0.0002 53
ENSMUST00000137627 Osbpl5-003 retained_intron Mus_musculus 0.0002 53
ENSMUST00000121409 Osbpl5-002 protein_coding Mus_musculus 0.0002 53
ENSMUST00000119499 Osbpl5-001 protein_coding Mus_musculus 0.0002 53

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