C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microtubule-associated protein 1 light chain 3 alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397709 MAP1LC3A-003 ENSG00000101460 9606 + 20:34558718-34560345 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397709
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397709 14.906±0.00 11.137±0.00 1.386±0.00 27.737±14.30 10.298±9.61 19.976±0.00 19.152±0.00 7.755±6.71 2.190±0.90 21.026±20.54 7.830±4.43 20.198±4.49 12.408±3.04 22.300±6.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0001 VISTA 20:33968769-34569610
CIL_0006S0 CIL_0006S0_0002 CGP 20:34516409-34560345
CIL_0005BD CIL_0005BD_0001 CGP 20:34546854-34677090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 ISS:IEA autophagic vacuole assembly
GO:0000422 IGI mitochondrion degradation
GO:0005515 IPI protein binding
GO:0005543 IDA phospholipid binding
GO:0005737 IEA cytoplasm
GO:0005776 IDA autophagic vacuole
GO:0005829 IDA cytosol
GO:0005874 IEA microtubule
GO:0008429 IDA phosphatidylethanolamine binding
GO:0031090 IDA organelle membrane
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029128 Map1lc3a-001 protein_coding Mus_musculus 0 693
ENSMUST00000154596 Map1lc3a-003 processed_transcript Mus_musculus 0 479
ENSMUST00000145086 Map1lc3a-002 processed_transcript Mus_musculus 0 394
ENSMUST00000181521 Map1lc3b-005 protein_coding Mus_musculus 0 254
ENSMUST00000034270 Map1lc3b-001 protein_coding Mus_musculus 0 254
ENSMUST00000180532 Gm6055-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000181948 Map1lc3b-003 protein_coding Mus_musculus 0 228
ENSMUST00000180548 Map1lc3b-002 retained_intron Mus_musculus 0 228
ENSMUST00000117640 Gm11949-001 processed_pseudogene Mus_musculus 1.4013e-45 187

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