C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB2B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397762 RAB2B-001 ENSG00000129472 9606 - 14:21459020-21476973 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartLiverLungOvaryTestisENST00000397762
Transcript ID Adrenal Bladder Brain Breast Heart Liver Lung Ovary Testis
ENST00000397762 10.528±0.00 2.064±0.00 8.462±2.01 6.537±0.29 3.379±0.81 2.929±0.00 3.966±0.00 7.160±1.00 9.517±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JD CIL_0003JD_0001 CGP 14:21385194-21476973
CIL_0008CX CIL_0008CX_0001 VISTA 14:21403052-22005074
CIL_0005QL CIL_0005QL_0001 CGP 14:21459020-21499175

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0045921 IMP positive regulation of exocytosis
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022765 Rab2b-001 protein_coding Mus_musculus 0 1114
ENSMUST00000167116 Rab2b-002 protein_coding Mus_musculus 0 965
ENSMUST00000100631 Rab2b-004 protein_coding Mus_musculus 0 789
ENSMUST00000174020 Rab2b-006 nonsense_mediated_decay Mus_musculus 0 531
ENSMUST00000173046 Rab2b-007 processed_transcript Mus_musculus 0 531
ENSMUST00000174585 Rab2b-003 retained_intron Mus_musculus 0 385
ENSMUST00000172488 Rab2b-008 nonsense_mediated_decay Mus_musculus 0 359
ENSMUST00000172634 Rab2b-009 nonsense_mediated_decay Mus_musculus 0 294
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.00001 57
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.00001 57

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