C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen and calcium binding EGF domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398179 CCBE1-201 ENSG00000183287 9606 - 18:59430940-59480240 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverMusclePlacentaTestisENST00000398179
Transcript ID Brain Breast Colon Heart Kidney Liver Muscle Placenta Testis
ENST00000398179 0.577±0.00 0.349±0.00 1.858±0.00 0.429±0.00 0.731±0.00 0.337±0.00 0.022±0.00 0.017±0.00 0.466±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001P5 CIL_0001P5_0001 CGP 18:59327823-59697380
CIL_0007FI CIL_0007FI_0001 CGP 18:59430940-59904306

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061103 Ccbe1-005 nonsense_mediated_decay Mus_musculus 0 1134
ENSMUST00000130300 Ccbe1-001 protein_coding Mus_musculus 0 1134
ENSMUST00000146610 Ccbe1-003 processed_transcript Mus_musculus 0 898
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00003 57
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00003 57

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