C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: La ribonucleoprotein domain family, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398473 LARP4-002 ENSG00000161813 9606 + 12:50400899-50480004 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398473 3.473±0.00 0.606±0.00 1.253±0.00 1.598±0.92 2.695±0.00 3.042±1.20 3.756±1.79 9.034±1.44 5.643±1.74 6.227±2.49 2.589±0.00 4.011±2.16 1.895±0.39 2.641±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_00051T CIL_00051T_0001 CGP 12:50175788-50396622
CIL_000058 CIL_000058_0001 CGP 12:50326230-50480004
CIL_0006DT CIL_0006DT_0001 CGP 12:50392383-50748667

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0007010 IMP cytoskeleton organization
GO:0016020 IDA membrane
GO:0022604 IMP regulation of cell morphogenesis
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100206 Larp4-202 protein_coding Mus_musculus 0 3118
ENSMUST00000057632 Larp4-201 protein_coding Mus_musculus 0 3025
ENSMUST00000122467 Gm14373-001 processed_pseudogene Mus_musculus 0 2254
ENSMUST00000181591 Gm8177-001 processed_pseudogene Mus_musculus 0 1485

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