C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family C (CFTR/MRP), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399410 ABCC1-001 ENSG00000103222 9606 + 16:15949577-16143062 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399410
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399410 4.762±0.00 5.617±0.00 0.643±0.00 4.068±3.32 3.889±0.00 2.698±2.29 2.805±0.00 1.120±0.83 5.191±4.12 3.984±0.00 5.276±2.65 5.079±0.53 10.517±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MS CIL_0006MS_0001 CGP 16:15865720-16143074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 TAS:IEA transporter activity
GO:0005524 IEA ATP binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006691 TAS leukotriene metabolic process
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0006810 TAS:IEA transport
GO:0009235 TAS cobalamin metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016887 IDA:IEA ATPase activity
GO:0019369 TAS arachidonic acid metabolic process
GO:0042493 TAS response to drug
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0044281 TAS small molecule metabolic process
GO:0055085 TAS:IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147759 Abcc1-004 nonsense_mediated_decay Mus_musculus 0 4364
ENSMUST00000100167 Abcc1-001 protein_coding Mus_musculus 0 4340
ENSMUST00000130671 Abcc1-010 nonsense_mediated_decay Mus_musculus 0 4239
ENSMUST00000133454 Abcc1-003 nonsense_mediated_decay Mus_musculus 0 2350
ENSMUST00000156089 Abcc1-002 retained_intron Mus_musculus 0 782
ENSMUST00000134960 Abcc1-006 retained_intron Mus_musculus 0 706
ENSMUST00000146032 Abcc1-005 retained_intron Mus_musculus 0 604
ENSMUST00000134776 Abcc1-011 protein_coding Mus_musculus 0 555
ENSDART00000151232 ABCC1-001 protein_coding Danio_rerio 0 538
ENSMUST00000144676 Abcc1-007 protein_coding Mus_musculus 0 385
ENSMUST00000154748 Abcc1-008 protein_coding Mus_musculus 0 289
ENSDART00000131340 protein_coding Danio_rerio 0 265
ENSDART00000042812 protein_coding Danio_rerio 0 259

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