C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 20 open reading frame 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399683 C20orf27-004 ENSG00000101220 9606 - 20:3753508-3758678 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399683
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399683 7.966±0.00 18.726±0.00 5.568±2.09 15.612±0.00 13.096±0.00 1.856±0.00 1.625±1.02 2.897±1.19 1.309±0.00 3.058±0.00 12.606±2.24 4.335±1.66 9.715±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033D CIL_00033D_0001 CGP 20:3753508-3781448

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000133602 1700037H04Rik-005 protein_coding Mus_musculus 0 359
ENSMUST00000028800 1700037H04Rik-002 protein_coding Mus_musculus 0 359
ENSMUST00000103188 1700037H04Rik-001 protein_coding Mus_musculus 0 359
ENSMUST00000136838 1700037H04Rik-004 retained_intron Mus_musculus 0 281
ENSMUST00000184535 1700037H04Rik-003 nonsense_mediated_decay Mus_musculus 0 281
ENSMUST00000184121 1700037H04Rik-006 nonsense_mediated_decay Mus_musculus 6e-40 169

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