C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small G protein signaling modulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000400358 SGSM1-001 ENSG00000167037 9606 + 22:24806269-24927578 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartOvaryPlacentaENST00000400358
Transcript ID Adipose Brain Colon Heart Ovary Placenta
ENST00000400358 0.070±0.00 0.740±0.00 0.152±0.00 0.095±0.00 0.329±0.13 0.110±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095C CIL_00095C_0001 VISTA 22:24783488-25386391

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0005794 IEA Golgi apparatus
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048112 Sgsm1-001 protein_coding Mus_musculus 0 3609
ENSMUST00000145708 Sgsm1-002 processed_transcript Mus_musculus 0 3083
ENSMUST00000057209 Sgsm1-004 protein_coding Mus_musculus 0 2531
ENSMUST00000112325 Sgsm1-003 protein_coding Mus_musculus 0 2309
ENSMUST00000147856 Sgsm1-005 processed_transcript Mus_musculus 0 2004
ENSMUST00000154248 Sgsm1-010 protein_coding Mus_musculus 0 1467
ENSMUST00000112324 Sgsm1-006 protein_coding Mus_musculus 0 614
ENSDART00000060946 SGSM1 (2 of 2)-201 protein_coding Danio_rerio 0 601
ENSDART00000142278 SGSM1 (2 of 2)-001 protein_coding Danio_rerio 0 601
ENSMUST00000140981 Sgsm1-007 retained_intron Mus_musculus 0 588
ENSDART00000092357 SGSM2-001 protein_coding Danio_rerio 0 472

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