C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000400577 RBM11-001 ENSG00000185272 9606 + 21:14216178-14228372 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainKidneyLiverLungOvaryPlacentaTestisENST00000400577
Transcript ID Adrenal Brain Kidney Liver Lung Ovary Placenta Testis
ENST00000400577 0.316±0.00 0.973±0.05 0.340±0.00 0.248±0.00 0.409±0.00 0.488±0.00 0.033±0.00 1.346±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MR CIL_0000MR_0002 CGP 21:14108813-14228372
CIL_00066K CIL_00066K_0001 CGP 21:14216130-14383484

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0006397 IEA mRNA processing
GO:0007275 IEA multicellular organismal development
GO:0008266 IDA poly(U) RNA binding
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0030154 IEA cell differentiation
GO:0034599 IDA cellular response to oxidative stress
GO:0042803 IDA protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046378 Rbm11-201 protein_coding Mus_musculus 0 560
ENSMUST00000114253 Rbm11-202 protein_coding Mus_musculus 0 560
ENSMUST00000114249 Rbm11-001 protein_coding Mus_musculus 0 549

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