C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cullin 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404115 CUL4B-001 ENSG00000158290 9606 - X:120526641-120575794 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLungMuscleTestisENST00000404115
Transcript ID Bladder Lung Muscle Testis
ENST00000404115 0.810±0.00 1.175±0.00 0.334±0.00 14.205±9.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016X CIL_00016X_0002 CGP X:120427827-120575794
CIL_0000GD CIL_0000GD_0002 CGP X:120524609-120621074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003684 IDA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007049 NAS cell cycle
GO:0031461 IEA cullin-RING ubiquitin ligase complex
GO:0031465 IDA Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 IEA ubiquitin protein ligase binding
GO:0035518 IDA histone H2A monoubiquitination
GO:0045732 IEA positive regulation of protein catabolic process
GO:0070062 IDA extracellular vesicular exosome
GO:0070914 IDA UV-damage excision repair
GO:1900087 IEA positive regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115118 Cul4b-001 protein_coding Mus_musculus 0 3840
ENSMUST00000016681 Cul4b-004 protein_coding Mus_musculus 0 3840
ENSMUST00000050083 Cul4b-003 protein_coding Mus_musculus 0 3781
ENSMUST00000147129 Cul4b-002 nonsense_mediated_decay Mus_musculus 0 2610

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