C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404735 RPS27A-002 ENSG00000143947 9606 + 2:55232678-55235755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000404735
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000404735 73.585±0.00 168.954±0.00 65.089±12.68 43.707±14.49 140.867±0.00 8.457±0.00 30.231±5.90 35.162±0.00 27.171±14.30 199.873±155.46 239.662±85.70 117.249±22.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Z4 CIL_0000Z4_0002 CGP 2:55231903-55269347

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000187 TAS activation of MAPK activity
GO:0000209 TAS protein polyubiquitination
GO:0000278 TAS mitotic cell cycle
GO:0002224 TAS toll-like receptor signaling pathway
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0002755 TAS MyD88-dependent toll-like receptor signaling pathway
GO:0002756 TAS MyD88-independent toll-like receptor signaling pathway
GO:0003735 IDA:IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005886 TAS plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0005978 TAS glycogen biosynthetic process
GO:0006006 TAS glucose metabolic process
GO:0006281 TAS DNA repair
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0006915 TAS apoptotic process
GO:0006977 TAS DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0007220 TAS Notch receptor processing
GO:0007249 TAS I-kappaB kinase/NF-kappaB signaling
GO:0007254 TAS JNK cascade
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010008 TAS endosome membrane
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0019068 TAS virion assembly
GO:0019082 TAS viral protein processing
GO:0019083 TAS viral transcription
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030512 TAS negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030666 TAS endocytic vesicle membrane
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0032479 TAS regulation of type I interferon production
GO:0032480 TAS negative regulation of type I interferon production
GO:0032481 TAS positive regulation of type I interferon production
GO:0034134 TAS toll-like receptor 2 signaling pathway
GO:0034138 TAS toll-like receptor 3 signaling pathway
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0034146 TAS toll-like receptor 5 signaling pathway
GO:0034162 TAS toll-like receptor 9 signaling pathway
GO:0034166 TAS toll-like receptor 10 signaling pathway
GO:0034220 TAS ion transmembrane transport
GO:0035666 TAS TRIF-dependent toll-like receptor signaling pathway
GO:0035872 TAS nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0038123 TAS toll-like receptor TLR1:TLR2 signaling pathway
GO:0038124 TAS toll-like receptor TLR6:TLR2 signaling pathway
GO:0042059 TAS negative regulation of epidermal growth factor receptor signaling pathway
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042981 TAS regulation of apoptotic process
GO:0043065 TAS positive regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0043123 TAS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0050852 TAS T cell receptor signaling pathway
GO:0051092 TAS positive regulation of NF-kappaB transcription factor activity
GO:0051403 TAS stress-activated MAPK cascade
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0055085 TAS transmembrane transport
GO:0061024 TAS membrane organization
GO:0061418 TAS regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070062 IDA extracellular vesicular exosome
GO:0070423 TAS nucleotide-binding oligomerization domain containing signaling pathway
GO:0071456 TAS cellular response to hypoxia
GO:0075733 TAS intracellular transport of virus
GO:0097190 TAS apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102844 Rps27a-004 protein_coding Mus_musculus 0 706
ENSMUST00000102845 Rps27a-003 protein_coding Mus_musculus 0 702
ENSMUST00000119780 Gm8430-001 processed_pseudogene Mus_musculus 0 669
ENSMUST00000078766 Rps27a-ps2-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000121261 Gm8317-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000121742 Gm11759-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000119963 Gm13815-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000160015 Gm16139-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000120658 Gm13622-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000185489 RP23-125B4.3-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000181136 Gm27018-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000117540 Gm13428-001 processed_pseudogene Mus_musculus 2.00386e-43 180
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 9.99995e-41 171
ENSMUST00000143418 Rps27a-001 processed_transcript Mus_musculus 2e-18 97
ENSMUST00000147782 Rps27a-002 processed_transcript Mus_musculus 0 407
ENSMUST00000121696 Gm12882-001 processed_pseudogene Mus_musculus 0 424

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