C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sad1 and UNC84 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405266 SUN1-001 ENSG00000164828 9606 + 7:832501-874900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLungMuscleENST00000405266
Transcript ID Adipose Brain Breast Colon Lung Muscle
ENST00000405266 11.881±0.00 3.304±0.00 7.722±0.00 4.491±0.00 6.703±0.00 10.452±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018K CIL_00018K_0001 CGP 7:726701-896435
CIL_00018J CIL_00018J_0001 CGP 7:816615-896436

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005635 IDA nuclear envelope
GO:0005639 IEA integral component of nuclear inner membrane
GO:0006998 IGI nuclear envelope organization
GO:0034993 IDA:IEA SUN-KASH complex
GO:0090286 IDA cytoskeletal anchoring at nuclear membrane
GO:0090292 IDA nuclear matrix anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078690 Sun1-004 protein_coding Mus_musculus 0 257
ENSMUST00000058716 Sun1-001 protein_coding Mus_musculus 0 257
ENSMUST00000110884 Sun1-003 protein_coding Mus_musculus 0 250
ENSMUST00000110883 Sun1-002 protein_coding Mus_musculus 0 250
ENSMUST00000110882 Sun1-005 protein_coding Mus_musculus 0 224
ENSMUST00000135926 Sun1-019 protein_coding Mus_musculus 0 220
ENSMUST00000126110 Sun1-017 processed_transcript Mus_musculus 0 217
ENSMUST00000126108 Sun1-020 retained_intron Mus_musculus 2e-35 156

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