C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lymphocyte-specific protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405957 LSP1-005 ENSG00000130592 9606 + 11:1868673-1892263 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000405957
Transcript ID Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000405957 6.537±0.00 3.611±0.00 2.121±0.00 1.532±0.00 1.451±0.00 2.300±0.00 12.727±4.45 3.847±2.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0001 VISTA 11:1663842-2266142
CIL_0007RG CIL_0007RG_0001 VISTA 11:1668349-2271510
CIL_00097V CIL_00097V_0001 VISTA 11:1688064-2293510
CIL_0005ML CIL_0005ML_0002 CGP 11:1838989-1892267
CIL_0005NK CIL_0005NK_0002 CGP 11:1852970-1892267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 TAS actin binding
GO:0004871 IEA signal transducer activity
GO:0005886 IEA plasma membrane
GO:0006928 TAS cellular component movement
GO:0006968 TAS cellular defense response
GO:0007165 IEA signal transduction
GO:0015629 TAS actin cytoskeleton
GO:0016020 IDA membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000132956 Lsp1-007 processed_transcript Mus_musculus 6.99949e-42 176

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