C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyrotrophic embryonic factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406644 TEF-003 ENSG00000167074 9606 + 22:41367333-41399324 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000406644
Transcript ID Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000406644 0.826±0.00 2.683±0.00 0.508±0.00 1.658±0.00 1.138±0.13 0.352±0.00 0.753±0.00 4.631±3.11 1.699±0.00 1.564±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065M CIL_00065M_0001 CGP 22:41301522-41399326

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0043565 IEA sequence-specific DNA binding
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109553 Tef-001 protein_coding Mus_musculus 0 1664
ENSMUST00000023024 Tef-006 protein_coding Mus_musculus 0 1360
ENSMUST00000168632 Tef-010 retained_intron Mus_musculus 0 695
ENSMUST00000164673 Tef-005 retained_intron Mus_musculus 0 621
ENSMUST00000168200 Tef-008 protein_coding Mus_musculus 0 527
ENSMUST00000172208 Tef-009 protein_coding Mus_musculus 0 377
ENSMUST00000167138 Tef-007 processed_transcript Mus_musculus 0 239
ENSMUST00000166302 Tef-004 processed_transcript Mus_musculus 8.40779e-45 187
ENSMUST00000170027 Tef-002 processed_transcript Mus_musculus 2.94273e-44 185
ENSMUST00000169952 Tef-003 processed_transcript Mus_musculus 0.00000000000003 86

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