C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: metastasis associated 1 family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406652 MTA3-001 ENSG00000057935 9606 + 2:42568045-42756947 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonLiverLungOvaryPlacentaTestisENST00000406652
Transcript ID Adrenal Bladder Brain Colon Liver Lung Ovary Placenta Testis
ENST00000406652 1.452±0.00 0.319±0.00 7.199±0.00 1.927±1.40 0.557±0.28 1.523±0.00 6.303±0.80 0.712±0.00 2.489±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TA CIL_0003TA_0002 CGP 2:42442017-42756947
CIL_0003T7 CIL_0003T7_0002 CGP 2:42494569-42764261

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112352 Mta3-004 protein_coding Mus_musculus 0 1914
ENSMUST00000067826 Mta3-001 protein_coding Mus_musculus 0 1895
ENSMUST00000177069 Mta3-003 nonsense_mediated_decay Mus_musculus 0 1842
ENSMUST00000112350 Mta3-002 protein_coding Mus_musculus 0 1598
ENSMUST00000112349 Mta3-005 protein_coding Mus_musculus 0 1585
ENSMUST00000176054 Mta3-008 protein_coding Mus_musculus 0 922
ENSMUST00000176816 Mta3-007 protein_coding Mus_musculus 0 691
ENSMUST00000175920 Mta3-009 processed_transcript Mus_musculus 0 316

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