C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 22, member 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406686 SLC22A23-006 ENSG00000137266 9606 - 6:3269458-3456559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000406686
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000406686 5.868±0.00 1.150±0.00 0.472±0.00 6.026±2.75 2.163±0.00 1.460±0.00 1.009±0.00 1.613±0.64 1.729±0.00 1.349±0.48 0.639±0.05 3.123±1.66 3.292±1.05 1.681±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081I CIL_00081I_0001 VISTA 6:2946622-3549686
CIL_000823 CIL_000823_0001 VISTA 6:3049163-3652023
CIL_0003IV CIL_0003IV_0001 CGP 6:3224261-3303373
CIL_00015Z CIL_00015Z_0002 CGP 6:3231403-3457022
CIL_0003IW CIL_0003IW_0001 CGP 6:3268962-3752026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006811 IEA ion transport
GO:0016021 IEA integral component of membrane
GO:0022857 IEA transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040336 Slc22a23-001 protein_coding Mus_musculus 0 2442
ENSMUST00000148390 Slc22a23-002 protein_coding Mus_musculus 0 2124
ENSMUST00000143353 Slc22a23-005 processed_transcript Mus_musculus 0 736
ENSMUST00000128392 Slc22a23-006 retained_intron Mus_musculus 0 610
ENSMUST00000145038 Slc22a23-004 nonsense_mediated_decay Mus_musculus 0 525

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