C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407073 MBD5-001 ENSG00000204406 9606 + 2:148021011-148513451 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000407073
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000407073 1.348±0.00 2.175±0.00 3.831±0.21 2.135±0.19 2.685±0.00 2.226±0.11 4.256±0.00 2.453±0.64 1.587±0.00 2.222±0.21 0.648±0.01 3.774±1.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MB CIL_0006MB_0001 CGP 2:147844517-148021604
CIL_0006MC CIL_0006MC_0001 CGP 2:147930397-148518236
CIL_000210 CIL_000210_0001 CGP 2:148021011-148787568

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IDA:IEA nucleus
GO:0007399 IMP nervous system development
GO:0010369 IDA chromocenter
GO:0040014 ISS regulation of multicellular organism growth
GO:0042593 ISS glucose homeostasis
GO:0044708 IMP single-organism behavior
GO:0060399 ISS positive regulation of growth hormone receptor signaling pathway
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112754 Mbd5-003 protein_coding Mus_musculus 0 7406
ENSMUST00000047413 Mbd5-001 protein_coding Mus_musculus 0 4625
ENSMUST00000112745 Mbd5-005 protein_coding Mus_musculus 0 4401
ENSMUST00000122841 Mbd5-002 protein_coding Mus_musculus 0 3350
ENSMUST00000132717 Mbd5-006 nonsense_mediated_decay Mus_musculus 0 865
ENSDART00000082954 mbd5-201 protein_coding Danio_rerio 5e-18 99
ENSMUST00000142250 Mbd5-009 processed_transcript Mus_musculus 0.0000000003 73
ENSMUST00000148796 Mbd5-010 processed_transcript Mus_musculus 0.000000001 71
ENSMUST00000123271 Orc4-005 protein_coding Mus_musculus 0.000000004 69
ENSMUST00000147055 Mbd5-007 processed_transcript Mus_musculus 0.00000005 66
ENSMUST00000147023 Mbd5-011 processed_transcript Mus_musculus 0.0001 55

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