C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407193 RPS14-201 ENSG00000164587 9606 - 5:150444231-150449756 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0001 VISTA 5:150006686-150608670
CIL_0003JB CIL_0003JB_0002 CGP 5:150443190-150558211

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000028 ISS ribosomal small subunit assembly
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 ISS RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005730 IDA nucleolus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006417 IMP regulation of translation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030218 IMP erythrocyte differentiation
GO:0030490 ISS maturation of SSU-rRNA
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045182 IMP translation regulator activity
GO:0048027 IDA mRNA 5'-UTR binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122279 Rps14-005 protein_coding Mus_musculus 0 682
ENSMUST00000025511 Rps14-001 protein_coding Mus_musculus 0 682
ENSMUST00000118551 Rps14-002 protein_coding Mus_musculus 0 680
ENSMUST00000072779 Gm5805-201 processed_pseudogene Mus_musculus 0 621
ENSMUST00000137400 Rps14-004 protein_coding Mus_musculus 0 597
ENSMUST00000127568 Rps14-003 protein_coding Mus_musculus 0 521
ENSMUST00000142980 Rps14-006 retained_intron Mus_musculus 0 455
ENSMUST00000164671 Gm17450-201 pseudogene Mus_musculus 0 453
ENSMUST00000121286 Gm13551-001 processed_pseudogene Mus_musculus 0 370

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