C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, alpha 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409532 ITGA6-003 ENSG00000091409 9606 + 2:172427418-172504534 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyMuscleOvaryENST00000409532
Transcript ID Kidney Muscle Ovary
ENST00000409532 1.563±0.00 3.302±0.00 12.666±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IK CIL_0003IK_0002 CGP 2:172099439-172506282
CIL_0004K8 CIL_0004K8_0001 CGP 2:172427354-172608669

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007044 TAS cell-substrate junction assembly
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007596 TAS blood coagulation
GO:0009986 IDA cell surface
GO:0010668 IEP ectodermal cell differentiation
GO:0030198 TAS extracellular matrix organization
GO:0031581 TAS hemidesmosome assembly
GO:0031589 IMP cell-substrate adhesion
GO:0034329 TAS cell junction assembly
GO:0035878 IMP nail development
GO:0042327 IMP positive regulation of phosphorylation
GO:0043065 IGI positive regulation of apoptotic process
GO:0043588 IMP skin development
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048565 IMP digestive tract development
GO:0050900 TAS leukocyte migration
GO:0072001 IMP renal system development
GO:0097186 IMP amelogenesis
GO:2001237 IMP negative regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028522 Itga6-001 protein_coding Mus_musculus 0 3177
ENSMUST00000112101 Itga6-002 protein_coding Mus_musculus 0 2593
ENSMUST00000155249 Itga6-004 protein_coding Mus_musculus 0 2272
ENSMUST00000185205 RP24-331H14.2-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000126787 Itga6-005 processed_transcript Mus_musculus 0 407

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