C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 9A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409618 ATG9A-004 ENSG00000198925 9606 - 2:219219382-219229368 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyOvaryPlacentaTestisENST00000409618
Transcript ID Brain Breast Colon Heart Kidney Ovary Placenta Testis
ENST00000409618 8.543±0.00 4.211±0.00 4.130±0.00 4.058±0.00 5.550±0.00 8.067±0.00 9.458±2.04 35.943±1.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006EB CIL_0006EB_0001 CGP 2:219195237-219218990
CIL_0006EA CIL_0006EA_0001 CGP 2:219209768-219229717
CIL_0006EI CIL_0006EI_0001 CGP 2:219209772-219236669

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IMP autophagic vacuole assembly
GO:0000407 IBA pre-autophagosomal structure
GO:0000422 IBA mitochondrion degradation
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IDA endosome
GO:0005770 IDA late endosome
GO:0005776 IBA autophagic vacuole
GO:0005783 IEA endoplasmic reticulum
GO:0005802 IDA trans-Golgi network
GO:0006914 IEA autophagy
GO:0015002 IEA heme-copper terminal oxidase activity
GO:0015031 IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0016021 IBA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0034067 IEA protein localization to Golgi apparatus
GO:0034497 IBA protein localization to pre-autophagosomal structure
GO:0034727 IBA piecemeal microautophagy of nucleus
GO:0044805 IBA late nucleophagy
GO:0045087 IEA innate immune response
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040689 Atg9a-201 protein_coding Mus_musculus 0 3976
ENSMUST00000188347 Atg9a-001 protein_coding Mus_musculus 0 3976
ENSMUST00000189702 Atg9a-002 protein_coding Mus_musculus 0 3976
ENSMUST00000189820 Atg9a-005 protein_coding Mus_musculus 0 3415
ENSMUST00000189665 Atg9a-003 nonsense_mediated_decay Mus_musculus 0 3140
ENSMUST00000187785 Atg9a-008 protein_coding Mus_musculus 0 913
ENSMUST00000188430 Atg9a-004 retained_intron Mus_musculus 0 839
ENSMUST00000187601 Atg9a-007 retained_intron Mus_musculus 0 285
ENSMUST00000186744 Atg9a-006 protein_coding Mus_musculus 0 276

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