C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox homolog 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409747 CBX3-003 ENSG00000122565 9606 + 7:26201765-26213356 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q3 CIL_0008Q3_0001 VISTA 7:25714231-26318034
CIL_000874 CIL_000874_0001 VISTA 7:25760923-26361842
CIL_0002CP CIL_0002CP_0001 CGP 7:26152240-26201529
CIL_0009DE CIL_0009DE_0001 VISTA 7:26185042-26786016
CIL_0002CO CIL_0002CO_0001 CGP 7:26189927-26213356
CIL_0007OD CIL_0007OD_0001 UCNEbase 7:26191819-26506343
CIL_0002CN CIL_0002CN_0001 CGP 7:26201162-26374329

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114446 Cbx3-005 protein_coding Mus_musculus 0 579
ENSMUST00000031862 Cbx3-002 protein_coding Mus_musculus 0 579
ENSMUST00000094623 Cbx3-001 protein_coding Mus_musculus 0 573
ENSMUST00000081455 Gm10068-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000181108 Gm6984-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000188772 Als2cr12-002 protein_coding Mus_musculus 0 355
ENSMUST00000091531 Gm5196-201 processed_pseudogene Mus_musculus 0 351
ENSMUST00000091539 Gm6917-201 processed_pseudogene Mus_musculus 0 351
ENSMUST00000185597 RP23-304F24.1-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000190083 RP23-231B19.1-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000141711 Cbx3-007 protein_coding Mus_musculus 0 254
ENSMUST00000114445 Cbx3-004 protein_coding Mus_musculus 0 254
ENSMUST00000091545 Gm6901-201 processed_pseudogene Mus_musculus 0 217
ENSMUST00000099421 Gm5792-201 processed_pseudogene Mus_musculus 0 217
ENSMUST00000118595 Cbx3-ps3-001 processed_pseudogene Mus_musculus 1e-38 165

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