C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: EPH receptor A4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409854 EPHA4-003 ENSG00000116106 9606 - 2:221425599-221572283 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000409854
Transcript ID Ovary
ENST00000409854 1.257±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006O4 CIL_0006O4_0001 CGP 2:219627327-221574202
CIL_0006XL CIL_0006XL_0001 CGP 2:221418027-222298996

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005003 IEA ephrin receptor activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005887 IEA integral component of plasma membrane
GO:0006468 IEA protein phosphorylation
GO:0007169 IEA transmembrane receptor protein tyrosine kinase signaling pathway
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0018108 IEA peptidyl-tyrosine phosphorylation
GO:0048013 IEA ephrin receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027451 Epha4-201 protein_coding Mus_musculus 0 3847
ENSMUST00000188797 Epha4-001 protein_coding Mus_musculus 0 3847
ENSMUST00000188952 Epha4-002 nonsense_mediated_decay Mus_musculus 0 3847
ENSMUST00000190149 Epha4-003 nonsense_mediated_decay Mus_musculus 0 3546
ENSMUST00000189934 Epha4-004 retained_intron Mus_musculus 0 2362
ENSMUST00000187346 Epha4-006 protein_coding Mus_musculus 0 795
ENSMUST00000186930 Epha4-005 protein_coding Mus_musculus 0 562
ENSDART00000156185 ephb2a-201 protein_coding Danio_rerio 0 459
ENSDART00000148120 ephb2a-001 protein_coding Danio_rerio 0 459
ENSDART00000050395 EPHB3 (2 of 2)-201 protein_coding Danio_rerio 0 348

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