C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif, single stranded interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409972 RBMS1-007 ENSG00000153250 9606 - 2:160274520-160407889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverMuscleOvaryPlacentaTestisENST00000409972
Transcript ID Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENST00000409972 1.870±0.00 1.297±0.00 3.949±0.00 5.280±0.00 0.879±0.00 6.485±0.41 43.338±0.00 4.929±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TW CIL_0005TW_0001 CGP 2:160099666-160493794
CIL_0005KZ CIL_0005KZ_0001 CGP 2:160272151-161236221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028347 Rbms1-001 protein_coding Mus_musculus 0 1938
ENSMUST00000164147 Rbms1-201 protein_coding Mus_musculus 0 1170
ENSMUST00000112509 Rbms1-002 protein_coding Mus_musculus 0 1170
ENSMUST00000123046 Rbms1-004 processed_transcript Mus_musculus 0 654
ENSMUST00000153555 Rbms1-003 processed_transcript Mus_musculus 0 481
ENSMUST00000132529 Rbms1-007 processed_transcript Mus_musculus 0 252
ENSMUST00000151846 Rbms1-009 processed_transcript Mus_musculus 0 250

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