C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409987 LSM5-010 ENSG00000106355 9606 - 7:32487035-32490380 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000409987
Transcript ID Adipose Adrenal Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000409987 3.577±0.00 6.240±0.00 3.496±0.00 4.549±0.00 6.268±0.00 6.556±0.00 4.144±0.00 3.160±0.00 11.189±2.74 4.125±0.00 6.059±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000359 CIL_000359_0001 CGP 7:31751179-32495283
CIL_0003FD CIL_0003FD_0001 CGP 7:32485332-32588721

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170382 Lsm5-001 protein_coding Mus_musculus 0 309
ENSMUST00000176595 Lsm5-002 processed_transcript Mus_musculus 0 292
ENSMUST00000145844 Gm7846-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000174543 Gm10074-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000177144 Lsm5-003 nonsense_mediated_decay Mus_musculus 0 230
ENSMUST00000175865 Lsm5-004 retained_intron Mus_musculus 0 219

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