C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 2 pseudogene 35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412164 HMGN2P35-001 ENSG00000232875 9606 - 10:96915633-96915902 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLungMuscleOvaryTestisENST00000412164
Transcript ID Adipose Adrenal Brain Breast Heart Lung Muscle Ovary Testis
ENST00000412164 0.059±0.00 0.128±0.00 0.262±0.00 1.476±0.00 0.124±0.00 0.334±0.00 0.060±0.00 0.436±0.00 0.282±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GA CIL_0003GA_0001 CGP 10:96593312-96981043
CIL_0008SO CIL_0008SO_0001 VISTA 10:96654859-97255972
CIL_0005ID CIL_0005ID_0001 CGP 10:96832260-96986212

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 311
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 311
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 311
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 311
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 305
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 303
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 303
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 303
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 300
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 300
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 283
ENSMUST00000153622 Hmgn2-013 retained_intron Mus_musculus 0 263
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 0 263
ENSMUST00000071770 Gm5899-201 processed_pseudogene Mus_musculus 0 243
ENSMUST00000097278 Gm6594-201 protein_coding Mus_musculus 0 243
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000118775 Gm15195-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 0 206
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 0 206
ENSMUST00000153501 Gm16510-001 processed_pseudogene Mus_musculus 4.00001e-41 171
ENSMUST00000136859 Hmgn2-008 retained_intron Mus_musculus 1e-21 106

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