C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S18 pseudogene 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412454 RPS18P12-001 ENSG00000230897 9606 - 17:14705076-14705534 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000412454
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000412454 0.992±0.00 1.189±0.00 0.236±0.00 0.675±0.00 0.574±0.00 0.159±0.00 0.629±0.00 0.098±0.02 0.475±0.00 1.612±0.00 0.524±0.06 0.124±0.00 0.467±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y3 CIL_0005Y3_0002 CGP 17:14301083-15265326

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008812 Rps18-001 protein_coding Mus_musculus 0 584
ENSMUST00000174745 Rps18-011 processed_transcript Mus_musculus 0 580
ENSMUST00000077163 Gm11361-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000074072 Gm10260-201 protein_coding Mus_musculus 0 573
ENSMUST00000120838 Rps18-ps1-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000080443 Rps18-ps3-201 protein_coding Mus_musculus 0 555
ENSMUST00000174609 Rps18-006 protein_coding Mus_musculus 0 483
ENSMUST00000174620 Rps18-012 retained_intron Mus_musculus 0 438
ENSMUST00000072050 Gm5321-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000174175 Rps18-005 retained_intron Mus_musculus 0 392
ENSMUST00000174662 Rps18-003 retained_intron Mus_musculus 3e-40 169

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