C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412769 RP11-329A14.1-001 ENSG00000235105 9606 + 1:48435967-48437223 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleENST00000412769
Transcript ID Liver Muscle
ENST00000412769 0.360±0.00 0.298±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000633 CIL_000633_0002 CGP 1:48295372-50023913
CIL_0008UZ CIL_0008UZ_0001 VISTA 1:48347085-48947691

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027185 Stradb-001 protein_coding Mus_musculus 0 1535
ENSMUST00000153990 Stradb-003 nonsense_mediated_decay Mus_musculus 0 1415
ENSMUST00000123301 Stradb-002 nonsense_mediated_decay Mus_musculus 0 640
ENSMUST00000114296 Stradb-004 protein_coding Mus_musculus 0 638
ENSMUST00000152318 Stradb-008 protein_coding Mus_musculus 0 531
ENSMUST00000147637 Stradb-005 retained_intron Mus_musculus 9.94922e-44 182
ENSMUST00000123965 Stradb-006 retained_intron Mus_musculus 5e-27 126

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