C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 7B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412922 COPS7B-005 ENSG00000144524 9606 + 2:231786445-231808764 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000412922
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000412922 4.101±0.00 6.539±0.00 2.897±0.00 2.406±0.00 2.569±0.00 2.351±0.00 1.759±0.00 3.901±0.00 6.247±0.99 4.287±0.61 12.418±3.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0007FM CIL_0007FM_0001 CGP 2:231706895-231786272
CIL_0007FL CIL_0007FL_0001 CGP 2:231732425-231809254
CIL_0007FO CIL_0007FO_0001 CGP 2:231781671-231926403

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0008180 IEA COP9 signalosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122884 Cops7b-002 nonsense_mediated_decay Mus_musculus 0 1971
ENSMUST00000027446 Cops7b-201 protein_coding Mus_musculus 0 1543
ENSMUST00000138280 Cops7b-003 nonsense_mediated_decay Mus_musculus 0 1543
ENSMUST00000121534 Cops7b-001 protein_coding Mus_musculus 0 1543
ENSMUST00000127219 Cops7b-004 processed_transcript Mus_musculus 0 263
ENSMUST00000149542 Cops7b-005 protein_coding Mus_musculus 5.99756e-43 180

Loading