C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | Sjogren syndrome antigen B (autoantigen La) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000413002  |
SSB-006 |
ENSG00000138385 |
9606 | + |
2:169798879-169806890  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0004SC | CIL_0004SC_0001 | CGP | 2:169694488-169812064 |
| CIL_0007VY | CIL_0007VY_0001 | VISTA | 2:169713097-170314655 |
| CIL_0004SJ | CIL_0004SJ_0001 | CGP | 2:169791933-169824931 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003723 | IEA | RNA binding |
| GO:0005634 | IEA | nucleus |
| GO:0006396 | IEA | RNA processing |
| GO:0030529 | IEA | ribonucleoprotein complex |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000166411
|
Ssb-201 | protein_coding | Mus_musculus | 0 | 479 |
|
ENSMUST00000112260
|
Ssb-003 | protein_coding | Mus_musculus | 0 | 479 |
|
ENSMUST00000132186
|
Ssb-002 | nonsense_mediated_decay | Mus_musculus | 0 | 479 |
|
ENSMUST00000090852
|
Ssb-001 | protein_coding | Mus_musculus | 0 | 479 |
|
ENSMUST00000156057
|
Ssb-004 | processed_transcript | Mus_musculus | 0 | 412 |
