C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4 (anion exchanger), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413384 SLC4A2-001 ENSG00000164889 9606 + 7:151059570-151076527 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000413384
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000413384 11.487±0.00 2.518±0.00 8.413±0.00 4.551±3.49 5.739±0.00 3.043±2.64 5.617±4.33 4.873±0.00 3.842±0.00 2.969±0.00 12.177±8.60 17.792±9.38 5.700±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0004ET CIL_0004ET_0001 CGP 7:151048292-151058530
CIL_0004ES CIL_0004ES_0001 CGP 7:151053812-151076527
CIL_0004ER CIL_0004ER_0001 CGP 7:151057210-151080866

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 TAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0006810 IEA transport
GO:0006811 TAS ion transport
GO:0006820 TAS:IEA anion transport
GO:0008509 TAS:IEA anion transmembrane transporter activity
GO:0015701 TAS bicarbonate transport
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080067 Slc4a2-001 protein_coding Mus_musculus 0 4604
ENSMUST00000115049 Slc4a2-009 protein_coding Mus_musculus 0 4220
ENSMUST00000115047 Slc4a2-002 protein_coding Mus_musculus 0 4220
ENSMUST00000132505 Slc4a2-013 retained_intron Mus_musculus 0 732
ENSMUST00000146765 Slc4a2-012 retained_intron Mus_musculus 0 641
ENSMUST00000140722 Slc4a2-014 retained_intron Mus_musculus 0 566
ENSMUST00000139081 Slc4a2-008 processed_transcript Mus_musculus 0 344
ENSMUST00000144305 Slc4a2-006 processed_transcript Mus_musculus 0 276
ENSMUST00000149537 Fastk-006 retained_intron Mus_musculus 0 246
ENSMUST00000115043 Fastk-004 protein_coding Mus_musculus 0 246

Loading