C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413787 SLC6A8-008 ENSG00000130821 9606 + X:153693054-153694576 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UZ CIL_0001UZ_0001 CGP X:153642492-153689010
CIL_0001UY CIL_0001UY_0001 CGP X:153669730-153696593
CIL_0001UX CIL_0001UX_0001 CGP X:153688099-153724697

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0006836 IEA neurotransmitter transport
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114467 Slc6a8-201 protein_coding Mus_musculus 0 272
ENSMUST00000170614 Slc6a8-009 retained_intron Mus_musculus 0 272
ENSMUST00000114464 Slc6a8-004 nonsense_mediated_decay Mus_musculus 0 272
ENSMUST00000114465 Slc6a8-002 protein_coding Mus_musculus 0 272
ENSMUST00000164449 Slc6a8-006 protein_coding Mus_musculus 0 272
ENSMUST00000168831 Slc6a8-003 protein_coding Mus_musculus 0 219
ENSMUST00000033752 Slc6a8-001 protein_coding Mus_musculus 0 207
ENSMUST00000168764 Slc6a8-013 retained_intron Mus_musculus 4.06377e-44 182
ENSMUST00000167828 Slc6a8-014 retained_intron Mus_musculus 5e-33 145
ENSMUST00000170574 Slc6a8-015 retained_intron Mus_musculus 5e-33 145
ENSMUST00000166200 Slc6a8-010 processed_transcript Mus_musculus 5e-33 145
ENSDART00000041794 slc6a6a-201 protein_coding Danio_rerio 0.000000000002 77
ENSDART00000146306 slc6a6a-001 protein_coding Danio_rerio 0.000000000002 77

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