C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000414070 RP11-20O24.4-001 ENSG00000244716 9606 + 1:108992282-108992836 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000414070
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000414070 0.103±0.00 0.137±0.00 0.237±0.00 0.247±0.22 0.178±0.00 0.736±0.00 0.283±0.26 0.218±0.00 0.026±0.00 0.085±0.02 0.055±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 721
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 715
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 704
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 693
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 693
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 671
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 472
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 339

Loading