C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type V, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000414099 SCN5A-004 ENSG00000183873 9606 - 3:38548057-38633349 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonMuscleOvaryPlacentaENST00000414099
Transcript ID Adipose Adrenal Colon Muscle Ovary Placenta
ENST00000414099 0.017±0.00 0.046±0.00 0.029±0.00 0.100±0.00 0.028±0.00 0.225±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BE CIL_0008BE_0001 VISTA 3:38261144-38866061
CIL_0005VU CIL_0005VU_0001 CGP 3:38496127-38649673
CIL_0004RF CIL_0004RF_0001 CGP 3:38548057-38794010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IEA voltage-gated sodium channel activity
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117911 Scn5a-001 protein_coding Mus_musculus 0 5295
ENSMUST00000065196 Scn5a-201 protein_coding Mus_musculus 0 5151
ENSMUST00000120420 Scn5a-002 protein_coding Mus_musculus 0 5138
ENSMUST00000084787 Scn10a-201 protein_coding Mus_musculus 0 1175
ENSMUST00000021056 Scn4a-001 protein_coding Mus_musculus 0 1048
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 809
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 809
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 782
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 782
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 782
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 782
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 782
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 776
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 776
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 706
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 706
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 706
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 706
ENSMUST00000156865 Scn1a-003 processed_transcript Mus_musculus 0 483
ENSDART00000106534 scn4aa-001 protein_coding Danio_rerio 0 427
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0 399
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0 399
ENSMUST00000126837 Scn3a-002 protein_coding Mus_musculus 0 318
ENSDART00000011718 scn1a-201 protein_coding Danio_rerio 0 265
ENSDART00000090979 scn1a-202 protein_coding Danio_rerio 0 265
ENSMUST00000144254 Scn2a1-002 protein_coding Mus_musculus 0 217
ENSMUST00000138934 Scn5a-003 protein_coding Mus_musculus 4.2039e-45 189
ENSMUST00000138368 Scn2a1-003 processed_transcript Mus_musculus 5.04467e-44 185

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