C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB17, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000414278 RAB17-003 ENSG00000124839 9606 - 2:237574355-237590715 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000414278
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000414278 0.170±0.00 0.224±0.00 1.207±0.00 1.328±0.00 33.486±0.00 38.715±0.00 7.670±0.00 4.459±3.04 8.568±3.65 1.315±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0001 VISTA 2:237013177-237616630
CIL_0007RW CIL_0007RW_0001 VISTA 2:237313736-237917924
CIL_0000XK CIL_0000XK_0001 CGP 2:237566574-237601614
CIL_0002H4 CIL_0002H4_0001 CGP 2:237574322-237813682

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000128226 Rab17-005 processed_transcript Mus_musculus 0 416
ENSMUST00000135819 Rab17-003 processed_transcript Mus_musculus 0 416
ENSMUST00000131428 Rab17-002 protein_coding Mus_musculus 0 414
ENSMUST00000027529 Rab17-001 protein_coding Mus_musculus 0 414
ENSMUST00000130042 Rab17-004 protein_coding Mus_musculus 0 316

Loading