C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415680 TRIM24-007 ENSG00000122779 9606 + 7:138460435-138585585 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000415680
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000415680 5.056±0.00 4.254±0.00 0.697±0.00 2.438±1.42 2.371±1.17 1.950±0.72 1.882±1.33 3.592±1.79 2.241±1.81 1.831±0.57 8.381±0.00 8.433±5.17 3.865±1.46 14.383±2.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q4 CIL_0002Q4_0001 CGP 7:138002324-138589993
CIL_0002Q3 CIL_0002Q3_0001 CGP 7:138460334-138701352

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002039 IPI p53 binding
GO:0003682 IDA chromatin binding
GO:0003713 IDA transcription coactivator activity
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005102 TAS receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0008270 IDA:IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030163 IMP protein catabolic process
GO:0031647 IMP regulation of protein stability
GO:0034056 IDA estrogen response element binding
GO:0042981 IMP regulation of apoptotic process
GO:0070577 IDA lysine-acetylated histone binding
GO:0071391 IDA cellular response to estrogen stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120428 Trim24-002 protein_coding Mus_musculus 0 3825
ENSMUST00000120238 Trim24-003 protein_coding Mus_musculus 0 1964
ENSMUST00000031859 Trim24-001 protein_coding Mus_musculus 0 1964
ENSMUST00000149828 Trim24-006 retained_intron Mus_musculus 0 1439
ENSMUST00000149561 Trim24-004 processed_transcript Mus_musculus 0 994
ENSMUST00000153004 Trim24-005 retained_intron Mus_musculus 0 608
ENSMUST00000135387 Trim24-008 retained_intron Mus_musculus 0 497
ENSMUST00000123007 Trim24-007 retained_intron Mus_musculus 0 366

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