C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416137 RP3-522D1.2-001 ENSG00000228040 9606 - 1:112890767-112890922 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainOvaryTestisENST00000416137
Transcript ID Adrenal Brain Ovary Testis
ENST00000416137 0.204±0.00 0.103±0.00 10.438±0.00 0.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000878 CIL_000878_0001 VISTA 1:112697401-113299438
CIL_0009BY CIL_0009BY_0001 VISTA 1:112697434-113299398

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 0 206
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 0 206
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 6.00036e-42 172
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 3e-40 167
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 4e-39 163
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 4e-39 163
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 5e-38 159
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 2e-37 158
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 4e-34 147
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 1e-33 145
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 1e-33 145
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 1e-29 132

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