C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TIA1 cytotoxic granule-associated RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416149 TIA1-004 ENSG00000116001 9606 - 2:70216672-70248454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastLiverLungMuscleENST00000416149
Transcript ID Bladder Breast Liver Lung Muscle
ENST00000416149 4.843±0.00 10.387±0.00 8.056±0.00 8.436±0.00 2.545±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0001 VISTA 2:69833131-70434482

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113708 Tia1-009 protein_coding Mus_musculus 0 1136
ENSMUST00000113712 Tia1-005 nonsense_mediated_decay Mus_musculus 0 1070
ENSMUST00000095753 Tia1-001 protein_coding Mus_musculus 0 900
ENSMUST00000095754 Tia1-010 protein_coding Mus_musculus 0 900
ENSMUST00000126404 Tia1-019 processed_transcript Mus_musculus 0 580
ENSMUST00000143718 Tia1-013 processed_transcript Mus_musculus 0 496
ENSMUST00000139928 Tia1-014 processed_transcript Mus_musculus 0 496
ENSMUST00000134142 Tia1-008 retained_intron Mus_musculus 0 442
ENSMUST00000156762 Tia1-017 processed_transcript Mus_musculus 0 435
ENSMUST00000154438 Tia1-022 processed_transcript Mus_musculus 0 435
ENSMUST00000130967 Tia1-002 protein_coding Mus_musculus 0 435
ENSMUST00000095752 Tia1-003 protein_coding Mus_musculus 0 435
ENSMUST00000148728 Tia1-012 processed_transcript Mus_musculus 0 435
ENSMUST00000124683 Tia1-024 processed_transcript Mus_musculus 0 412
ENSMUST00000113713 Tia1-007 protein_coding Mus_musculus 0 407
ENSMUST00000152852 Tia1-020 retained_intron Mus_musculus 0 361
ENSMUST00000136387 Tia1-011 retained_intron Mus_musculus 0 322
ENSMUST00000149270 Tia1-023 retained_intron Mus_musculus 0 272
ENSMUST00000141960 Tia1-006 retained_intron Mus_musculus 0 228
ENSMUST00000123002 Tia1-018 processed_transcript Mus_musculus 1e-25 121
ENSMUST00000154983 Tia1-004 processed_transcript Mus_musculus 0.00000000000007 82

Loading