C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417077 RP11-339A7.1-001 ENSG00000229765 9606 - 6:10213881-10214362 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartLungPlacentaTestisENST00000417077
Transcript ID Adipose Colon Heart Lung Placenta Testis
ENST00000417077 0.028±0.00 0.057±0.03 0.028±0.00 0.028±0.00 0.047±0.00 0.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NC CIL_0007NC_0001 UCNEbase 6:8153140-10408054
CIL_00097A CIL_00097A_0001 VISTA 6:10093642-10694839
CIL_00086X CIL_00086X_0001 VISTA 6:10107199-10709812

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 490
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 490
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 490
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 484
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 468
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 462
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 462
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 451
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 440
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 440
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 440
ENSMUST00000121754 Gm12618-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000080097 Gm16415-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000120458 Gm7071-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 9.94922e-44 180
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 1e-39 167
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 2e-36 156
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 6e-17 92

Loading