C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation elongation factor 1 alpha 1 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417549 EEF1A1P3-001 ENSG00000232587 9606 + 13:28214513-28215897 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000417549
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000417549 0.591±0.00 0.617±0.00 0.320±0.00 0.327±0.00 1.363±0.86 1.180±0.73 0.178±0.00 0.433±0.00 0.311±0.25 0.403±0.13 0.238±0.09 1.194±0.86 0.143±0.11 0.319±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MT CIL_0007MT_0001 UCNEbase 13:27505095-28294517
CIL_0000G0 CIL_0000G0_0002 CGP 13:28003274-28295335
CIL_0000G1 CIL_0000G1_0002 CGP 13:28138506-28495128

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042235 Eef1a1-001 protein_coding Mus_musculus 0 1500
ENSMUST00000118928 Gm13456-001 processed_pseudogene Mus_musculus 0 1430
ENSMUST00000187672 RP23-307G23.3-001 processed_pseudogene Mus_musculus 0 1421
ENSMUST00000118650 Gm6767-001 processed_pseudogene Mus_musculus 0 1345
ENSMUST00000161562 Gm5822-001 processed_pseudogene Mus_musculus 0 1240
ENSMUST00000121596 Gm12912-001 processed_pseudogene Mus_musculus 0 1232
ENSMUST00000167498 Gm6548-001 processed_pseudogene Mus_musculus 0 1216
ENSMUST00000144523 Eef1a1-005 retained_intron Mus_musculus 0 881
ENSMUST00000154207 Eef1a1-008 protein_coding Mus_musculus 0 854
ENSDART00000128726 eef1a1a-001 protein_coding Danio_rerio 0 773
ENSMUST00000126614 Eef1a1-006 retained_intron Mus_musculus 0 734
ENSMUST00000156988 Eef1a1-003 protein_coding Mus_musculus 0 636
ENSMUST00000187291 RP23-465C10.2-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000150960 Eef1a1-002 retained_intron Mus_musculus 0 597
ENSDART00000016121 eef1a1a-002 protein_coding Danio_rerio 0 451
ENSMUST00000189923 RP23-478L14.1-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000129380 Eef1a1-004 retained_intron Mus_musculus 0 383

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