C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417961 SLC9A8-201 ENSG00000197818 9606 + 20:49812713-49892241 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungMuscleOvaryPlacentaTestisENST00000417961
Transcript ID Brain Lung Muscle Ovary Placenta Testis
ENST00000417961 0.499±0.00 0.771±0.00 2.627±0.00 0.566±0.00 0.388±0.00 0.584±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I4 CIL_0008I4_0001 VISTA 20:49375075-49977641
CIL_000277 CIL_000277_0001 CGP 20:49632945-49892242
CIL_00087E CIL_00087E_0001 VISTA 20:49719805-50323644
CIL_0001VJ CIL_0001VJ_0001 CGP 20:49812713-49915508

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005794 IEA Golgi apparatus
GO:0006811 TAS ion transport
GO:0006812 IEA cation transport
GO:0006813 IEA potassium ion transport
GO:0006814 IEA sodium ion transport
GO:0006885 IEA regulation of pH
GO:0015299 IEA solute:proton antiporter activity
GO:0015385 IEA sodium:proton antiporter activity
GO:0015386 IEA potassium:proton antiporter activity
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:0051453 IEA regulation of intracellular pH
GO:0055085 TAS:IEA transmembrane transport
GO:0071805 IEA potassium ion transmembrane transport
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073873 Slc9a8-201 protein_coding Mus_musculus 0 1552
ENSMUST00000131956 Slc9a8-005 processed_transcript Mus_musculus 0 1552
ENSMUST00000047815 Slc9a8-001 protein_coding Mus_musculus 0 1552
ENSMUST00000109218 Slc9a8-004 protein_coding Mus_musculus 0 1485
ENSMUST00000148454 Slc9a8-007 processed_transcript Mus_musculus 0 968
ENSMUST00000155585 Slc9a8-012 processed_transcript Mus_musculus 0 935
ENSMUST00000139673 Slc9a8-006 processed_transcript Mus_musculus 0 808
ENSMUST00000125855 Slc9a8-011 processed_transcript Mus_musculus 0 732
ENSMUST00000135353 Slc9a8-008 retained_intron Mus_musculus 0 590
ENSMUST00000141400 Slc9a8-009 processed_transcript Mus_musculus 0 577
ENSMUST00000124139 Slc9a8-003 retained_intron Mus_musculus 0 276
ENSMUST00000150326 Slc9a8-002 retained_intron Mus_musculus 0 241
ENSMUST00000149607 Slc9a8-010 processed_transcript Mus_musculus 0 217

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