C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418698 TAF4B-003 ENSG00000141384 9606 + 18:26226883-26391683 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000418698
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000418698 0.130±0.00 1.307±0.00 0.422±0.00 0.182±0.00 0.400±0.00 0.451±0.00 0.054±0.00 0.606±0.00 0.755±0.10 0.436±0.00 0.521±0.03 0.751±0.11 1.121±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LU CIL_0007LU_0001 UCNEbase 18:24628254-26687255
CIL_0000QZ CIL_0000QZ_0001 CGP 18:26133852-26391685
CIL_0006ER CIL_0006ER_0001 CGP 18:26225936-26657401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IEA transcription factor TFIID complex
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0046982 IEA protein heterodimerization activity
GO:0051059 IPI NF-kappaB binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169862 Taf4b-201 protein_coding Mus_musculus 0 1526

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