C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, U (pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418981 HLA-U-001 ENSG00000228078 9606 + 6:29934101-29934286 unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyLungOvaryPlacentaTestisENST00000418981
Transcript ID Adipose Adrenal Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000418981 12.773±0.00 30.244±0.00 2.265±0.00 1.861±0.00 4.140±0.00 91.141±0.00 131.201±182.79 0.422±0.00 0.853±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0002 CGP 6:29826967-29945884

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172782 H2-K1-007 processed_transcript Mus_musculus 3e-31 137
ENSMUST00000173075 H2-K1-010 protein_coding Mus_musculus 3e-31 137
ENSMUST00000025181 H2-K1-001 protein_coding Mus_musculus 3e-31 137
ENSMUST00000114311 H2-K1-002 retained_intron Mus_musculus 3e-31 137
ENSMUST00000172912 H2-K1-003 protein_coding Mus_musculus 3e-31 137
ENSMUST00000184502 H2-Bl-008 protein_coding Mus_musculus 3e-16 88
ENSMUST00000185087 H2-Bl-005 nonsense_mediated_decay Mus_musculus 3e-16 88
ENSMUST00000173080 H2-Bl-201 protein_coding Mus_musculus 3e-16 88

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